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GMER, a free rootkit scanning tool built by Polish Windows internals guru, is widely hailed as the best at ferreting out stealth rootkits from PCs. GMER does an excellent job of finding hidden processes hidden services, hidden files hidden registry keys, hidden drivers and all kinds of driver hooking. It can also serve as a process explorer to monitor the creating of processes, the loading of drivers and libraries and file function and registry entries.

McAfee Rootkit Detective 1.0 is a program designed and developed by McAfee Avert Labs to proactively detect and clean rootkits that are running on the system. McAfee Rootkit Detective should only be used by knowledgeable individuals at the direction of, and with the support of, a representative from McAfee Avert Labs or McAfee Technical Support. Improper usage of this tool could result in damage to your applications or operating system.

Trend Micro RootkitBuster is a rootkit scanner that offers ability to scan for hidden files, registry entries, processes, drivers and hooked system service. It also includes the cleaning capability for hidden files and registry entries.